A Biomolecular Method for the Detection of Wood Decay Fungi: A Focus on Tree Stability Assessment

LITERATURE CITED

1. ↵
   1. Anselmi, N., and
   2. M. Bragaloni

   . 1992. A method to identify wood decay Basidiomycetes by using enzymatic comparisons. Micologia Italiana 2:15–20.

   OpenUrl
2. ↵
   1. Bahnweg, G.,
   2. E.M. Möller,
   3. S. Anegg,
   4. C. Langebartels,
   5. O. Wienhaus, and
   6. H. Sandermann Jr.

   2002. Detection of Heterobasidion annosum s.l. [(Fr.) Bref.] in Norway spruce by polymerase chain reaction. Journal of Phytopathology 150:382–389.

   OpenUrl
3. ↵
   1. Bernicchia, A.

   2005. Polyporaceae s.l. Ed. Candusso, Alassio, Italy. 808 pp.
4. ↵
   1. Blanchette, R.A.

   1991. Delignification by wood-decay fungi. Annual Review of Phytopathology 29:381–398.

   OpenUrlCrossRefWeb of Science
5. ↵
   1. Clausen, C.A.

   2003. Detecting decay fungi with antibody-based tests and immunoassays. Wood Deterioration and Preservation 845:325–336.

   OpenUrl
6. ↵
   1. Corbiere Morot-Bizot, S.,
   2. R. Talon, and
   3. S. Leroy

   . 2004. Development of a multiplex PCR for the identification of Staphylococcus genus and four staphylococcal species isolated from food. Journal of Applied Microbiology 97:1087–1094.

   OpenUrlCrossRefPubMed
7. ↵
   1. Dreistadt, S.H.,
   2. J.K. Clark, and
   3. M.L. Flint

   . 2004. Pests of Landscape Trees and Shrubs: An Integrated Pest Management Guide, UC Statewide IPM Program. Univ. Calif. Agric. Nat. Res. Publ. 3359; Oakland, CA.
8. ↵
   1. Elnifro, E.M.,
   2. A.M. Ashshi,
   3. R.J. Cooper, and
   4. P.E. Klapper

   . 2000. Multiplex PCR: Optimization and application in diagnostic virology. Clinical Microbiology Reviews 13:559–570.

   OpenUrlAbstract/FREE Full Text
9. ↵
   1. Gardes, M., and
   2. T.D. Bruns

   . 1993. ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Molecular Ecology 2:113–118.

   OpenUrlCrossRefPubMedWeb of Science
10. ↵
    1. Gonthier, P.,
    2. M. Garbelotto, and
    3. G. Nicolotti

    . 2003. Swiss stone pine trees and spruce stumps represent an important habitat for Heterobasidion spp. in subalpine forests. Forest Pathology 33:191–203.

    OpenUrl
11. ↵
    1. Guglielmo, F.,
    2. S.E. Bergemann,
    3. P. Gonthier,
    4. G. Nicolotti, and
    5. M. Garbelotto

    . 2007. A multiplex PCR-based method for the detection and early identification of wood rotting fungi in standing trees. Journal of Applied Microbiology 103:1490–1507.

    OpenUrlCrossRefPubMedWeb of Science
12. ↵
    1. Guglielmo, F.,
    2. P. Gonthier,
    3. M. Garbelotto, and
    4. G. Nicolotti

    . 2008. A PCR-based method for the identification of important wood rotting fungal taxa within Ganoderma, Inonotus s.l. and Phellinus s.l. FEMS Letters in Microbiology 282:228–237.

    OpenUrl
13. ↵
    1. Habermehl, A.,
    2. H.W. Ridder, and
    3. P. Seidl

    . 1999. Computerized tomographic systems as tools for diagnosing urban tree health. Acta Horticulturae 496:261–268.

    OpenUrl
14. ↵
    1. Hayden, K.J.,
    2. D. Rizzo,
    3. J. Tse, and
    4. M. Garbelotto

    . 2004. Detection and quantification of Phytophthora ramorum from California forests using a Real-time polymerase chain reaction assay. Phytopathology 94:1075–1083.

    OpenUrlCrossRefPubMedWeb of Science
15. ↵
    1. Hickman, G.W., and
    2. E.J. Perry

    . 1997. Ten Common Wood Decay Fungi on Landscape Trees—Identification Handbook. Western Chapter, ISA, Sacramento, CA.
16. ↵
    1. Hong, S.G., and
    2. H.S. Jung

    . 2004. Phylogenetic analysis of Ganoderma based on nearly complete mitochondrial small-subunit ribosomal DNA sequences. Mycologia 96:742–755.

    OpenUrlCrossRefPubMedWeb of Science
17. ↵
    1. Jasalavich, C.A.,
    2. A. Ostrofsky, and
    3. J. Jellison

    . 2000. Detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rRNA. Applied and Environmental Microbiology 66:4725–4734.

    OpenUrlAbstract/FREE Full Text
18. ↵
    1. Jellison, J., and
    2. C. Jasalavich

    . 2000. A review of selected methods for the detection of degradative fungi. International Biodeterioration & Biodegradation 46:241–244.

    OpenUrl
19. ↵
    1. Lonsdale, D.

    1999. Principles of Tree Hazard Assessment and Management. Research for Amenity Trees 7. The Stationery Office, London, UK. 388 pp.
20. ↵
    1. Mattheck, C., and
    2. H. Breloer

    . 1992. Feldaleitung fur Baumkkontrollen mit VTA. Landschaftarchitektur. 6 pp.
21. ↵
    1. Moreth, U., and
    2. O. Schmidt

    . 2001. Identification of indoor rot fungi by taxon-specific priming polymerase chain reaction. Holzforschung 54:1–8.

    OpenUrl
22. ↵
    1. Müller, U.,
    2. R. Bammer,
    3. E. Halmschlager, and
    4. R. Wimmer

    . 2001. Detection of fungal wood decay using magnetic resonance imaging. Holz Roh-Werkstoff 59:190–194.

    OpenUrlCrossRef
23. ↵
    1. Nicolotti, G.,
    2. P. Gonthier, and
    3. D. Pecollo

    . 2004. Ecologia e grado di preferenza d’ospite dei funghi agenti di carie/I parte. Acer 1:47–51.

    OpenUrl
24. ↵
    1. Nobles, M.K.

    1965. Identification of cultures of wood-inhabiting hymenomycetes. Canadian Journal of Botany 44:1097–1165.

    OpenUrl
25. ↵
    1. Reynolds, D.R., and
    2. Taylor, J.W.

    1. O’Donnell, K.

    1993. Fusarium and its near relatives, pp. 225–233. In: Reynolds, D.R., and Taylor, J.W. (Eds.). The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics. CAB International, Wallingford, UK.
26. ↵
    1. Sambuelli, L.,
    2. L.V. Socco,
    3. A. Godio,
    4. G. Nicolotti, and
    5. R. Martinis

    . 2003. Ultrasonic, electric and radar measurements for living tree assessment. Journal of Earth Sciences 44:253–279.

    OpenUrl
27. ↵
    1. Stalpers, J.A.

    1978. Identification of wood-inhabiting Aphyllophorales in pure culture. Studies in Mycology 16: 248 pp.

    OpenUrl
28. ↵
    1. Thompson, J.D.,
    2. D.G. Higgins, and
    3. T.J. Gibson

    . 1994. CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673–4680.

    OpenUrlCrossRefPubMedWeb of Science
29. ↵
    1. Tomikawa, Y.,
    2. Y. Iwase,
    3. K. Arita, and
    4. H. Yamada

    . 1990. Nondestructive inspection of wooden poles using ultrasonic computed tomography. IEEE Transaction on UFFC 33:354–358.

    OpenUrl
30. ↵
    1. Wagner, T., and
    2. M. Fischer

    . 2001. Natural groups and a revised system for the European poroid Hymenochaetales (Basidiomycota) supported by nLSU rDNA sequence data. Mycological Research 105:773–782.

    OpenUrlCrossRef
31. ↵
    1. Wagner, T., and
    2. M. Fischer

    . 2002. Proceedings towards a natural classification of the worldwide taxa Phellinus s.l. and Inonotus s.l., and phylogenetic relationships of allied genera. Mycologia 94:998–1016.

    OpenUrlCrossRefPubMedWeb of Science
32. ↵
    1. Innis, M.A.,
    2. D.H. Gelfand,
    3. J.J. Sninsky, and
    4. T.J. White

    1. White, T.J.,
    2. T.D. Bruns,
    3. S. Lee, and
    4. J.W. Taylor

    . 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylo genetics, pp. 315–322. In: Innis, M.A., D.H. Gelfand, J.J. Sninsky, and T.J. White (Eds.). PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, CA.